STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
samm50SAMM50 sorting and assembly machinery component. (469 aa)    
Predicted Functional Partners:
LOC101163689
Metaxin.
   
 0.963
mtx3
Metaxin.
   
 0.963
mtx2
Metaxin 2.
   
 0.956
immt
MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.
   
 0.952
LOC101170291
Uncharacterized protein.
    
 0.931
tomm40
Translocase of outer mitochondrial membrane 40 homolog (yeast).
    
 0.931
tomm22
Translocase of outer mitochondrial membrane 22 homolog (yeast).
   
 0.885
LOC101165273
MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.
   
 0.876
mbtps2
Membrane-bound transcription factor peptidase, site 2.
  
  
 0.862
TOMM7
Translocase of outer mitochondrial membrane 7.
   
 0.801
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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