samm50 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

samm50

SAMM50 sorting and assembly machinery component. (469 aa)

Predicted Functional Partners:

mtx2

0.982

LOC101165273

0.968

immt

0.951

map1lc3c

0.910

map1lc3a

0.907

map1lc3b

0.907

tomm22

0.905

GABARAPL2

0.904

gabarap

0.904

LOC101170049

0.901

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GABARAPL2	LOC101170049	ENSORLP00000038235	ENSORLP00000014971	GABA type A receptor associated protein like 2.	Zgc:92606.	0.908
GABARAPL2	gabarap	ENSORLP00000038235	ENSORLP00000041539	GABA type A receptor associated protein like 2.	GABA(A) receptor-associated protein b.	0.902
GABARAPL2	map1lc3a	ENSORLP00000038235	ENSORLP00000026217	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 alpha.	0.727
GABARAPL2	map1lc3b	ENSORLP00000038235	ENSORLP00000039408	GABA type A receptor associated protein like 2.	RNA-dependent DNA polymerase.	0.727
GABARAPL2	map1lc3c	ENSORLP00000038235	ENSORLP00000024884	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 gamma.	0.574
GABARAPL2	mtx2	ENSORLP00000038235	ENSORLP00000025946	GABA type A receptor associated protein like 2.	Metaxin 2.	0.662
GABARAPL2	samm50	ENSORLP00000038235	ENSORLP00000001697	GABA type A receptor associated protein like 2.	SAMM50 sorting and assembly machinery component.	0.904
LOC101165273	immt	ENSORLP00000029973	ENSORLP00000025572	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.999
LOC101165273	mtx2	ENSORLP00000029973	ENSORLP00000025946	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Metaxin 2.	0.966
LOC101165273	samm50	ENSORLP00000029973	ENSORLP00000001697	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	SAMM50 sorting and assembly machinery component.	0.968
LOC101165273	tomm22	ENSORLP00000029973	ENSORLP00000040201	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Translocase of outer mitochondrial membrane 22 homolog (yeast).	0.640
LOC101170049	GABARAPL2	ENSORLP00000014971	ENSORLP00000038235	Zgc:92606.	GABA type A receptor associated protein like 2.	0.908
LOC101170049	gabarap	ENSORLP00000014971	ENSORLP00000041539	Zgc:92606.	GABA(A) receptor-associated protein b.	0.908
LOC101170049	mtx2	ENSORLP00000014971	ENSORLP00000025946	Zgc:92606.	Metaxin 2.	0.657
LOC101170049	samm50	ENSORLP00000014971	ENSORLP00000001697	Zgc:92606.	SAMM50 sorting and assembly machinery component.	0.901
gabarap	GABARAPL2	ENSORLP00000041539	ENSORLP00000038235	GABA(A) receptor-associated protein b.	GABA type A receptor associated protein like 2.	0.902
gabarap	LOC101170049	ENSORLP00000041539	ENSORLP00000014971	GABA(A) receptor-associated protein b.	Zgc:92606.	0.908
gabarap	map1lc3a	ENSORLP00000041539	ENSORLP00000026217	GABA(A) receptor-associated protein b.	Microtubule-associated protein 1 light chain 3 alpha.	0.727
gabarap	map1lc3b	ENSORLP00000041539	ENSORLP00000039408	GABA(A) receptor-associated protein b.	RNA-dependent DNA polymerase.	0.727
gabarap	map1lc3c	ENSORLP00000041539	ENSORLP00000024884	GABA(A) receptor-associated protein b.	Microtubule-associated protein 1 light chain 3 gamma.	0.574