STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ltv1LTV1 ribosome biogenesis factor. (469 aa)    
Predicted Functional Partners:
bysl
Bystin-like.
   
 0.999
tsr1
TSR1 ribosome maturation factor.
   
 0.999
riok2
RIO domain-containing protein.
   
 0.999
nob1
NIN1 (RPN12) binding protein 1 homolog.
   
 0.999
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.997
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 0.997
rps12
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
 0.997
riok1
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
   
 0.996
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 0.995
rps21
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
    
 0.994
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.