STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160907Si:ch73-281f12.4. (1082 aa)    
Predicted Functional Partners:
LOC101167529
RAP1A, member of RAS oncogene family b.
    
 0.937
radil
Ras association and DIL domains.
  
  
 
0.906
LOC101157201
Si:ch211-176g6.2.
  
  
 
0.905
LOC101168734
Ras interacting protein 1.
     
0.902
exoc4
Exocyst complex component 4.
   
 0.558
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 
 0.497
exoc1
Exocyst complex component 1.
   
 0.479
ccm2l
CCM2 like scaffold protein.
   
 
 0.470
exoc6
Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
   
 0.464
LOC101175047
Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
   
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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