STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arl13aADP-ribosylation factor-like 13A. (439 aa)    
Predicted Functional Partners:
cog8
Component of oligomeric golgi complex 8.
   
 0.826
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.787
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.764
ift81
Intraflagellar transport 81 homolog.
    
 
 0.713
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 
 0.701
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 
 0.655
tmf1
TATA element modulatory factor 1.
     
 0.626
pde6d
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]
     
 0.623
ift88
Intraflagellar transport 88 homolog.
    
 0.617
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.602
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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