STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem35aTransmembrane protein 35. (161 aa)    
Predicted Functional Partners:
LOC101154936
SAS-6 centriolar assembly protein.
    
   0.872
cenpj
Centromere protein J.
    
   0.872
ccdc22
Coiled-coil domain containing 22.
      
 0.598
ccdc25
Coiled-coil domain containing 25.
      
 0.569
tm2d2
TM2 domain containing 2.
    
 
 0.564
LOC101163615
FRA10A associated CGG repeat 1.
      
 0.541
pithd1
PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1.
      
 0.536
spag8
Sperm associated antigen 8.
      
 0.535
ttc36
Tetratricopeptide repeat domain 36.
      
 0.531
LOC101175074
RIC3 domain-containing protein.
     
 0.516
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.