STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
taldo1Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. (338 aa)    
Predicted Functional Partners:
LOC101162749
Transketolase a.
  
 0.994
TKT
Transketolase.
  
 0.994
LOC101158764
Transketolase b.
  
 0.994
LOC101165489
Triosephosphate isomerase; Triosephosphate isomerase is an extremely efficient metabolic enzyme that catalyzes the interconversion between dihydroxyacetone phosphate (DHAP) and D-glyceraldehyde-3-phosphate (G3P) in glycolysis and gluconeogenesis.
  
 0.992
tpi1
Triosephosphate isomerase.
  
 0.992
LOC101167730
Glyceraldehyde-3-phosphate dehydrogenase.
  
 
 0.990
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
  
 
 0.990
pdhb
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.989
LOC101173933
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.987
gpi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.987
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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