STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ticrrTreslin_N domain-containing protein. (1831 aa)    
Predicted Functional Partners:
topbp1
DNA topoisomerase II binding protein 1.
    
 
 0.900
fbl
Fibrillarin.
   
 
 0.881
tbl3
Transducin (beta)-like 3.
   
 
 0.790
cdc45
CDC45 cell division cycle 45 homolog (S. cerevisiae).
   
  
 0.782
wdr36
WD repeat domain 36.
   
 
 0.764
exo1
Exonuclease 1.
  
 
 0.750
LOC101167684
PWP2 small subunit processome component.
   
 
 0.745
utp15
UTP15 small subunit processome component.
   
 
 0.737
utp4
UTP4 small subunit processome component.
   
 
 0.737
tefm
UTP6 small subunit processome component.
   
 
 0.730
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.