cenpi protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cenpi

Centromere protein I. (731 aa)

Predicted Functional Partners:

cenpk

0.999

cenpm

0.997

cenpn

0.996

cenpq

0.993

H2MZX5_ORYLA

0.993

cenpw

0.959

ndc80

0.950

cenpu

0.920

CENPS

0.916

KIF18A

0.916

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CENPS	H2MZX5_ORYLA	ENSORLP00000004448	ENSORLP00000024654	Centromere protein S.	Centromere protein P.	0.913
CENPS	cenpi	ENSORLP00000004448	ENSORLP00000001792	Centromere protein S.	Centromere protein I.	0.916
CENPS	cenpk	ENSORLP00000004448	ENSORLP00000015913	Centromere protein S.	Centromere protein K.	0.913
CENPS	cenpm	ENSORLP00000004448	ENSORLP00000029786	Centromere protein S.	Proliferation associated nuclear element.	0.927
CENPS	cenpn	ENSORLP00000004448	ENSORLP00000012008	Centromere protein S.	Centromere protein N.	0.893
CENPS	cenpq	ENSORLP00000004448	ENSORLP00000006319	Centromere protein S.	Uncharacterized protein.	0.927
CENPS	cenpu	ENSORLP00000004448	ENSORLP00000010813	Centromere protein S.	Uncharacterized protein.	0.727
CENPS	cenpw	ENSORLP00000004448	ENSORLP00000035203	Centromere protein S.	Uncharacterized protein.	0.859
CENPS	ndc80	ENSORLP00000004448	ENSORLP00000006880	Centromere protein S.	NDC80 kinetochore complex component.	0.691
H2MZX5_ORYLA	CENPS	ENSORLP00000024654	ENSORLP00000004448	Centromere protein P.	Centromere protein S.	0.913
H2MZX5_ORYLA	KIF18A	ENSORLP00000024654	ENSORLP00000007463	Centromere protein P.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.691
H2MZX5_ORYLA	cenpi	ENSORLP00000024654	ENSORLP00000001792	Centromere protein P.	Centromere protein I.	0.993
H2MZX5_ORYLA	cenpk	ENSORLP00000024654	ENSORLP00000015913	Centromere protein P.	Centromere protein K.	0.996
H2MZX5_ORYLA	cenpm	ENSORLP00000024654	ENSORLP00000029786	Centromere protein P.	Proliferation associated nuclear element.	0.996
H2MZX5_ORYLA	cenpn	ENSORLP00000024654	ENSORLP00000012008	Centromere protein P.	Centromere protein N.	0.993
H2MZX5_ORYLA	cenpq	ENSORLP00000024654	ENSORLP00000006319	Centromere protein P.	Uncharacterized protein.	0.999
H2MZX5_ORYLA	cenpu	ENSORLP00000024654	ENSORLP00000010813	Centromere protein P.	Uncharacterized protein.	0.928
H2MZX5_ORYLA	cenpw	ENSORLP00000024654	ENSORLP00000035203	Centromere protein P.	Uncharacterized protein.	0.968
H2MZX5_ORYLA	ndc80	ENSORLP00000024654	ENSORLP00000006880	Centromere protein P.	NDC80 kinetochore complex component.	0.790
KIF18A	H2MZX5_ORYLA	ENSORLP00000007463	ENSORLP00000024654	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Centromere protein P.	0.691