STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iqcb1IQ motif containing B1. (665 aa)    
Predicted Functional Partners:
haus8
Uncharacterized protein.
     
 0.785
ENSORLP00000029707
Uncharacterized protein.
    
 
 0.742
Cep290
Uncharacterized protein.
    
 
 0.742
ENSORLP00000044416
Uncharacterized protein.
    
 
 0.742
nphp1
Nephronophthisis 1.
    
 0.658
nphp4
Uncharacterized protein.
    
 
 0.629
rab3il1
RAB3A interacting protein (rabin3)-like 1.
    
 0.611
rab3ip
RAB3A interacting protein (rabin3).
    
 0.611
LOC101166817
Nuclear protein, ataxia-telangiectasia locus.
   
 
 0.600
LOC101159906
RAB11B, member RAS oncogene family, b.
   
 0.598
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.