STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf14RBR-type E3 ubiquitin transferase. (479 aa)    
Predicted Functional Partners:
ar-alpha
Uncharacterized protein.
    
 
 0.703
LOC100049233
Androgen receptor beta subtype.
    
 
 0.703
LOC101162427
DnaJ heat shock protein family (Hsp40) member A1.
      
 0.563
crebrf
Creb3 regulatory factor.
    
 
 0.562
rnf216
Ring finger protein 216.
     
0.461
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
   
 
 0.446
ube2l3
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.436
arih1
RBR-type E3 ubiquitin transferase.
     
0.434
rnf217
RBR-type E3 ubiquitin transferase.
     
0.434
etf1
Eukaryotic translation termination factor 1b.
    
 
 0.429
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.