STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pus10Pseudouridine synthase 10. (535 aa)    
Predicted Functional Partners:
abitram
Actin binding transcription modulator.
    
   0.829
ENSORLP00000033990
NOP10 ribonucleoprotein homolog (yeast).
     
 0.695
pus7
Pseudouridine synthase 7.
   
  
 0.690
rpusd1
RNA pseudouridine synthase domain containing 1.
      
 0.642
pus7l
Pseudouridine synthase 7 like.
   
  
 0.593
dkc1
Dyskeratosis congenita 1, dyskerin.
   
  
 0.588
trub2
TruB pseudouridine (psi) synthase family member 2.
   
  
 0.587
pus1
Pseudouridine synthase 1.
   
  
 0.583
pus3
Pseudouridylate synthase 3.
   
  
 0.579
thumpd2
THUMP domain containing 2.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.