STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tatdn2TatD DNase domain containing 2. (673 aa)    
Predicted Functional Partners:
ccdc174
Coiled-coil domain containing 174.
 
 
  
 0.820
pdxdc1
Pyridoxal-dependent decarboxylase domain containing 1.
      
 0.705
LOC101155771
PPP1R35_C domain-containing protein.
      
 0.691
mtfr1l
Mitochondrial fission regulator 1-like.
      
 0.558
bahd1
Bromo adjacent homology domain containing 1.
   
  
 0.555
fndc3b
Fibronectin type III domain containing 3Ba.
      
 0.545
LOC101163011
Transcobalamin II.
   
  
 0.515
LOC101165016
Solute carrier family 15 member 1a.
     
 0.512
fndc3a
Fibronectin type III domain containing 3A.
      
 0.511
LOC101160202
Solute carrier family 15 member 2.
     
 0.510
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.