STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tatdn2TatD DNase domain containing 2. (673 aa)    
Predicted Functional Partners:
ccdc174
Coiled-coil domain containing 174.
 
 
  
 0.909
pdxdc1
Pyridoxal-dependent decarboxylase domain containing 1.
      
 0.800
LOC101155771
PPP1R35_C domain-containing protein.
      
 0.785
mtfr1l
Mitochondrial fission regulator 1-like.
      
 0.750
ccnb2
G2/mitotic-specific cyclin-B2; Essential for the control of the cell cycle at the G2/M (mitosis) transition; Belongs to the cyclin family. Cyclin AB subfamily.
   
  
 0.717
rps18
Ribosomal protein S18.
     
 0.712
tatdn1
TatD DNase domain containing 1.
      
 0.690
rrn3
RRN3 homolog, RNA polymerase I transcription factor.
      
 0.687
bahd1
Bromo adjacent homology domain containing 1.
   
  
 0.643
fndc3b
Fibronectin type III domain containing 3Ba.
      
 0.608
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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