STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168952Keratin 18a, tandem duplicate 1; Belongs to the intermediate filament family. (430 aa)    
Predicted Functional Partners:
Unc79
Uncharacterized protein.
   
 0.706
LOC101167707
Keratin 5; Belongs to the intermediate filament family.
   
 0.647
cpsf1
Cleavage and polyadenylation specific factor 1.
    
  0.501
LOC101168366
Keratin 8; Belongs to the intermediate filament family.
   
 0.476
LOC101172973
Keratin 4; Belongs to the intermediate filament family.
   
 0.476
LOC101160447
RAN binding protein 2.
    
 0.474
ino80e
INO80 complex subunit E.
   
  0.471
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.457
WDR33
WD repeat domain 33.
    
  0.444
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
  0.439
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.