Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169203Keratin 18a, tandem duplicate 2; Belongs to the intermediate filament family. (423 aa)    
Predicted Functional Partners:
Unc79
Uncharacterized protein.
    
 0.683
LOC101160447
RAN binding protein 2.
    
 0.474
Tep1
Uncharacterized protein.
    
 0.426
ENSORLP00000040907
TROVE domain-containing protein.
    
 0.426
ENSORLP00000041818
Uncharacterized protein.
    
 0.426
eef1g
Eukaryotic translation elongation factor 1 gamma.
    
 0.420
rbbp5
Retinoblastoma binding protein 5.
    
 0.417
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.417
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.405
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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