STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd29Ankyrin repeat domain 29. (267 aa)    
Predicted Functional Partners:
LOC101158278
SplA/ryanodine receptor domain and SOCS box containing 3a.
     
 0.732
spsb3
SplA/ryanodine receptor domain and SOCS box containing 3b.
     
 0.731
tmem241
Uncharacterized protein.
      
 0.722
tfcp2
Transcription factor CP2.
    
   0.667
ubp1
Upstream binding protein 1.
    
   0.667
add1
Adducin 1 (alpha).
    
  0.642
LOC101164133
Adducin 3 (gamma) a.
    
  0.642
LOC101170613
Adducin 3 (gamma) b.
    
  0.642
add2
Adducin 2 (beta).
    
  0.642
cdh22
Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins.
   
 0.624
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.