STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd29Ankyrin repeat domain 29. (267 aa)    
Predicted Functional Partners:
npc1
Niemann-Pick disease, type C1.
 
  
 
 0.582
tmem241
Uncharacterized protein.
    
 
 0.564
LOC101170743
Ankyrin repeat domain 10a.
  
   
 0.563
ankrd10
Ankyrin repeat domain 10b.
  
   
 0.552
LOC101162015
Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.
  
  
  0.526
cdkn2b
Cyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4).
  
  
 0.526
LOC101171716
Serine/threonine-protein phosphatase.
    
 0.517
PPP6C
Serine/threonine-protein phosphatase.
    
 0.517
LOC101158278
SplA/ryanodine receptor domain and SOCS box containing 3a.
     
 0.515
spsb3
SplA/ryanodine receptor domain and SOCS box containing 3b.
     
 0.514
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.