STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167120Solute carrier family 25 member 39; Belongs to the mitochondrial carrier (TC 2.A.29) family. (373 aa)    
Predicted Functional Partners:
cct6a
Chaperonin containing TCP1, subunit 6A (zeta 1).
   
 
 0.620
caprin1
Cell cycle associated protein 1b.
      
 0.618
LOC101165381
Cell cycle associated protein 1a.
      
 0.618
dtymk
Deoxythymidylate kinase (thymidylate kinase).
      
 0.617
pcnp
PEST proteolytic signal containing nuclear protein.
      
 0.617
med30
Mediator complex subunit 30.
      
 0.617
LOC101171110
Transmembrane protein 14Cb.
   
  
 0.616
LOC101162485
Transmembrane protein 14Ca.
   
  
 0.616
isca1
Iron-sulfur cluster assembly 1.
   
  
 0.615
cct8
Chaperonin containing TCP1, subunit 8 (theta).
      
 0.611
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.