STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167120Solute carrier family 25 member 39; Belongs to the mitochondrial carrier (TC 2.A.29) family. (373 aa)    
Predicted Functional Partners:
cct6a
Chaperonin containing TCP1, subunit 6A (zeta 1).
   
 
 0.581
pcnp
PEST proteolytic signal containing nuclear protein.
      
 0.580
dtymk
Deoxythymidylate kinase (thymidylate kinase).
   
  
 0.579
caprin1
Cell cycle associated protein 1b.
      
 0.568
LOC101165381
Cell cycle associated protein 1a.
      
 0.568
med30
Mediator complex subunit 30.
      
 0.568
cct8
Chaperonin containing TCP1, subunit 8 (theta).
      
 0.538
cct2
Uncharacterized protein.
   
 
 0.527
exosc3
Exosome component 3.
      
 0.518
snd1
Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.
      
 0.517
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.