STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc9Coiled-coil domain containing 9. (738 aa)    
Predicted Functional Partners:
eif4a3
Eukaryotic translation initiation factor 4A3.
   
  0.962
gtpbp1
GTP binding protein 1.
   
  
 0.864
BBOF1
Basal body orientation factor 1.
    
 
 0.728
ncbp3
Nuclear cap binding subunit 3.
    
   0.716
ccdc181
Coiled-coil domain containing 181.
      
 0.706
Pnn
Pinin, desmosome associated protein.
    
   0.702
ENSORLP00000039193
Pinin_SDK_N domain-containing protein.
    
   0.702
thoc7
THO complex 7.
    
   0.701
fggy
FGGY carbohydrate kinase domain containing.
    
 
 0.654
LOC101165510
Uncharacterized protein.
      
 0.653
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.