Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171319Uncharacterized protein; Belongs to the AAA ATPase family. (388 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.992
LOC101164680
Charged multivesicular body protein 5a.
   
 0.981
LOC101159542
Charged multivesicular body protein 5b.
   
 0.981
chmp1b
Chromatin modifying protein 1B.
   
 0.980
chmp1a
Charged multivesicular body protein 1A.
   
 0.980
ist1
IST1 factor associated with ESCRT-III.
   
 0.934
chmp2a
Charged multivesicular body protein 2A.
    
 0.914
chmp3
Charged multivesicular body protein 3.
   
 0.911
LOC101160750
Protein kinase domain-containing protein.
    
 0.905
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
  
  
 
0.901
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.