STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162601Uncharacterized protein. (1124 aa)    
Predicted Functional Partners:
LOC101169531
Sortilin.
    
 
 0.816
LOC101158853
Sortilin.
    
 
 0.776
endog
Endonuclease.
      
 0.716
LOC101157659
Sortilin.
    
 
 0.700
LOC101170982
Uncharacterized protein.
   
 
 0.668
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
    
 
 0.661
Glrx3
Glutaredoxin 3.
    
 
 0.647
lamp1
Lysosomal associated membrane protein 1a.
   
 
 0.604
ctsb
Cathepsin Ba; Belongs to the peptidase C1 family.
   
 0.604
psap
Prosaposin; Prosaposin: Behaves as a myelinotrophic and neurotrophic factor, these effects are mediated by its G-protein-coupled receptors, GPR37 and GPR37L1, undergoing ligand-mediated internalization followed by ERK phosphorylation signaling.
   
 0.604
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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