STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rundc1RUN domain containing 1. (563 aa)    
Predicted Functional Partners:
H2LGJ7_ORYLA
Si:ch211-131k2.3.
      
 0.690
vps51
VPS51 subunit of GARP complex.
   
  
 0.588
ccdc186
Si:ch211-225b10.4.
      
 0.560
vps53
VPS53 subunit of GARP complex.
      
 0.558
vps54
VPS54 subunit of GARP complex.
      
 0.487
tmf1
TATA element modulatory factor 1.
      
 0.487
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.483
vps52
VPS52 subunit of GARP complex.
      
 0.461
cadps
Ca2+-dependent activator protein for secretion a.
      
 0.441
vps50
VPS50 EARP/GARPII complex subunit.
      
 0.426
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.