Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rundc1RUN domain containing 1. (563 aa)    
Predicted Functional Partners:
vps51
VPS51 subunit of GARP complex.
   
  
 0.733
ccdc96
DUF4201 domain-containing protein.
      
 0.694
ccdc186
Si:ch211-225b10.4.
      
 0.689
tmf1
TATA element modulatory factor 1.
      
 0.600
H2LGJ7_ORYLA
Si:ch211-131k2.3.
      
 0.550
ica1l
Islet cell autoantigen 1-like.
    
 
 0.539
Ica1
Islet cell autoantigen 1.
    
 
 0.539
cadps
Ca2+-dependent activator protein for secretion a.
      
 0.508
cwc22
CWC22 spliceosome associated protein homolog.
      
 0.507
LOC101162593
E74-like factor 3 (ets domain transcription factor, epithelial-specific ).
      
 0.506
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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