STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cep19Centrosomal protein 19. (157 aa)    
Predicted Functional Partners:
LOC101159434
RAB, member of RAS oncogene family-like 2.
    
 
 0.793
fgfr1op
FOP_dimer domain-containing protein.
    
 
 0.779
ENSORLP00000037521
Centrosomal protein 350.
    
 
 0.681
ubxn7
UBX domain protein 7.
      
 0.560
sclt1
Sodium channel and clathrin linker 1.
      
 0.559
cep162
Centrosomal protein 162.
      
 0.558
fopnl
Fgfr1op N-terminal like.
      
 0.489
cep89
Uncharacterized protein.
      
 0.482
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
      
 0.469
bves
Blood vessel epicardial substance.
      
 0.447
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.