Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165241Protein disulfide-isomerase. (494 aa)    
Predicted Functional Partners:
LOC101160304
Calreticulin.
   
 0.962
LOC101162115
Calreticulin.
   
 0.962
LOC101169735
Calreticulin.
   
 0.962
hspa5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 0.932
pdia3
Protein disulfide-isomerase.
  
  
 
0.902
tapbp
Uncharacterized protein.
    
 0.852
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 0.833
LOC101167922
Endoplasmic reticulum oxidoreductase alpha.
   
 0.793
ero1b
Endoplasmic reticulum oxidoreductase beta.
   
 0.793
canx
Calnexin.
   
 0.779
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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