STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sars1Seryl-tRNA synthetase. (516 aa)    
Predicted Functional Partners:
PSTK
Phosphoseryl-tRNA kinase.
     
 0.991
mettl6
Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.
    
 
 0.960
gars1
Glycyl-tRNA synthetase.
   
  
 0.936
yars1
Tyrosine--tRNA ligase.
  
  
 0.930
tfam
Transcription factor A, mitochondrial.
   
  
 0.914
sars2
Seryl-tRNA synthetase 2, mitochondrial.
  
  
 
0.907
LOC101156643
Ras homolog, mTORC1 binding like 1.
 
   
  0.899
sepsecs
O-phosphoseryl-tRNA(Sec) selenium transferase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis.
     
 0.886
wars1
Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.878
LOC101172905
Ubiquitin carboxyl-terminal hydrolase.
    
   0.856
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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