STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sars1Seryl-tRNA synthetase. (516 aa)    
Predicted Functional Partners:
PSTK
Phosphoseryl-tRNA kinase.
     
 0.965
gars1
Glycyl-tRNA synthetase.
   
  
 0.939
sars2
Seryl-tRNA synthetase 2, mitochondrial.
  
  
 
0.907
LOC101156643
Ras homolog, mTORC1 binding like 1.
 
      0.899
yars1
Tyrosine--tRNA ligase.
  
  
 0.896
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 
 0.889
supt20h
SPT20 homolog, SAGA complex component.
    
 
 0.887
tada2a
Transcriptional adapter.
    
 
 0.883
sgf29
SAGA complex associated factor 29.
    
 
 0.874
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
   
 
 0.871
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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