STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156813Aggrecan b. (1240 aa)    
Predicted Functional Partners:
LOC101171095
Zmp:0000000846.
   
 0.786
LOC101170815
Tenascin C.
   
 0.786
LOC101160748
Hyaluronan and proteoglycan link protein 1b.
   
0.758
hapln1
Hyaluronan and proteoglycan link protein 1a.
   
0.758
tnr
Tenascin R (restrictin, janusin).
   
 0.754
fmod
Fibromodulin a.
     
 0.716
lum
Lumican.
   
 0.689
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
     
 0.648
bgn
Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
   
 
 0.601
aspn
Asporin.
   
 
 0.601
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.