Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156813Aggrecan b. (1240 aa)    
Predicted Functional Partners:
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
    
 0.886
LOC101171095
Zmp:0000000846.
   
 0.848
LOC101170815
Tenascin C.
   
 0.848
tnr
Tenascin R (restrictin, janusin).
   
 0.814
fmod
Fibromodulin a.
    
 0.795
lum
Lumican.
    
 0.759
LOC101160748
Hyaluronan and proteoglycan link protein 1b.
   
 0.725
hapln1
Hyaluronan and proteoglycan link protein 1a.
   
 0.725
mad1l1
Mitotic arrest deficient 1 like 1.
    
 
 0.721
prelp
Proline/arginine-rich end leucine-rich repeat protein.
    
 0.705
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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