Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RILPL1Rab interacting lysosomal protein like 1. (383 aa)    
Predicted Functional Partners:
RAB29
RAB29, member RAS oncogene family.
      
 0.914
ccnb3
Cyclin B3; Belongs to the cyclin family.
      
 0.901
LOC101161334
Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).
    
 
 0.812
rab12
RAB12, member RAS oncogene family.
    
 0.766
vps39
VPS39 subunit of HOPS complex.
    
 
 0.716
phkg1
Phosphorylase kinase, gamma 1a (muscle); Belongs to the protein kinase superfamily.
    
   0.715
phkg2
Phosphorylase kinase, gamma 2 (testis); Belongs to the protein kinase superfamily.
    
   0.715
LOC101163007
Uncharacterized protein.
      
 0.698
LOC101173932
Discs, large (Drosophila) homolog-associated protein 4b.
      
 0.698
rab7a
Uncharacterized protein.
    
 0.647
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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