Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FHL1Four and a half LIM domains 1. (297 aa)    
Predicted Functional Partners:
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 
 0.808
LOC101156213
Calcium channel, voltage-dependent, alpha 2/delta subunit 1a.
   
  
 0.648
SYNPO2
Synaptopodin 2.
   
 
 0.628
plekhg2
Pleckstrin homology domain containing, family G (with RhoGef domain) member 2.
    
 
 0.613
rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 
 0.572
LOC101172101
Vinculin a.
   
 0.537
LACTB2
Lactamase beta 2.
    
   0.511
bag3
BCL2 associated athanogene 3.
    
 0.508
vcl
Vinculin b.
   
 0.507
dvl3
Dishevelled segment polarity protein 3a.
    
 0.475
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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