STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FHL1Four and a half LIM domains 1. (297 aa)    
Predicted Functional Partners:
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 
 0.884
rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 
 0.657
LOC101156213
Calcium channel, voltage-dependent, alpha 2/delta subunit 1a.
   
  
 0.589
SYNPO2
Synaptopodin 2.
   
 
 0.562
vcl
Vinculin b.
   
 0.533
LOC101172101
Vinculin a.
   
 0.533
tln2
Talin 2b.
    
 
 0.519
LOC101173776
Talin 2a.
    
 
 0.519
ILK
Integrin linked kinase.
    
 0.513
LOC101172012
Uncharacterized protein.
    
 0.513
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.