Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167779Si:ch211-121a2.4. (247 aa)    
Predicted Functional Partners:
pwp1
PWP1 homolog, endonuclein.
      
 0.498
tmem14a
Zgc:163080.
   
  
 0.473
LOC101175434
Nuclear receptor coactivator.
      
 0.467
LOC101167719
Uncharacterized protein.
      
 0.465
LOC101168718
Uncharacterized protein.
      
 0.465
LOC101158934
Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).
      
 0.465
LOC101161353
Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).
      
 0.450
LOC101158485
NME/NM23 nucleoside diphosphate kinase 2a; Belongs to the NDK family.
   
  
 0.439
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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