STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc84Coiled-coil domain containing 84. (234 aa)    
Predicted Functional Partners:
LOC101171133
Uncharacterized protein.
      
 0.627
tut1
Terminal uridylyl transferase 1, U6 snRNA-specific.
    
   0.575
txnl4b
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 
 0.571
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
    
   0.568
mrpl40
Mitochondrial ribosomal protein L40.
      
 0.558
mrgbp
MRG/MORF4L binding protein.
   
  
 0.498
tmem208
Transmembrane protein 208.
      
 0.487
LOC101159117
Torsin family 1.
      
 0.485
kiaa0556
Uncharacterized protein.
      
 0.408
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 
 0.407
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.