STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167791Amino acid transporter. (663 aa)    
Predicted Functional Partners:
slc3a2
Solute carrier family 3 member 2a.
   
 
 0.708
slc7a5
Solute carrier family 7 member 5.
   
  
 0.662
slc7a7
Solute carrier family 7 member 7.
   
  
 0.555
cltrn
Si:dkey-194e6.1.
      
 0.507
slc38a8
Solute carrier family 38 member 8a.
    
 
 0.485
dbt
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
    
 0.473
slc38a9
Solute carrier family 38 member 9.
    
 
 0.446
asl
Argininosuccinate lyase.
     
 0.444
GLS
Glutaminase.
   
  
 0.441
stmn4
Stathmin-like 4.
   
 
 0.415
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.