Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
USP34Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family. (2781 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.946
rps27a
Ribosomal protein S27a.
   
 0.895
ubc
Ubiquitin B.
   
  0.822
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.815
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
   
 0.815
usp9x
Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family.
   
  0.799
LOC101161417
Ash1 (absent, small, or homeotic)-like (Drosophila).
   
 
 0.783
ash1l
Uncharacterized protein.
   
 
 0.783
setd2
SET domain containing 2, histone lysine methyltransferase.
   
   0.781
birc6
Baculoviral IAP repeat containing 6.
   
 0.760
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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