Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175372RRM domain-containing protein. (337 aa)    
Predicted Functional Partners:
thoc2
THO complex 2.
   
 0.959
eif4a3
Eukaryotic translation initiation factor 4A3.
   
 0.956
thoc1
THO complex 1.
    
 0.950
thoc3
THO complex 3.
   
 0.949
thoc5
THO complex 5.
   
 0.947
thoc7
THO complex 7.
   
 0.941
nxf1
Zgc:153681.
    
 0.940
chtop
Chromatin target of PRMT1a.
   
 0.937
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.935
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.935
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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