STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bbs4Bardet-Biedl syndrome 4. (535 aa)    
Predicted Functional Partners:
bbs9
Bardet-Biedl syndrome 9.
   
 0.992
bbs2
Bardet-Biedl syndrome 2 protein homolog.
   
 0.990
bbs7
Bardet-Biedl syndrome 7.
   
 0.989
bbs1
Bardet-Biedl syndrome 1.
   
 0.988
ttc8
Tetratricopeptide repeat domain 8.
  
0.980
lztfl1
Leucine zipper transcription factor-like 1.
   
 0.909
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.871
pcm1
Pericentriolar material 1.
   
 
 0.870
LOC111949086
BTB domain-containing protein.
    
 0.857
LOC101166589
Kelch-like family member 40b.
    
 0.857
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.