LOC101165216 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101165216

Secretory carrier-associated membrane protein. (336 aa)

Predicted Functional Partners:

scamp3

0.890

scamp1

0.710

SCAMP1

0.710

LOC101164850

0.506

JAGN1

0.506

sar1b

0.467

mblac2

0.464

SLC25A30

0.464

slc25a14

0.464

fyco1

0.464

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JAGN1	LOC101165216	ENSORLP00000028628	ENSORLP00000002027	Jagunal homolog 1.	Secretory carrier-associated membrane protein.	0.506
LOC101164850	LOC101165216	ENSORLP00000014778	ENSORLP00000002027	Jagunal homolog 1a.	Secretory carrier-associated membrane protein.	0.506
LOC101165216	JAGN1	ENSORLP00000002027	ENSORLP00000028628	Secretory carrier-associated membrane protein.	Jagunal homolog 1.	0.506
LOC101165216	LOC101164850	ENSORLP00000002027	ENSORLP00000014778	Secretory carrier-associated membrane protein.	Jagunal homolog 1a.	0.506
LOC101165216	SCAMP1	ENSORLP00000002027	ENSORLP00000028153	Secretory carrier-associated membrane protein.	Secretory carrier-associated membrane protein.	0.710
LOC101165216	SLC25A30	ENSORLP00000002027	ENSORLP00000013827	Secretory carrier-associated membrane protein.	Solute carrier family 25 member 30; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.464
LOC101165216	fyco1	ENSORLP00000002027	ENSORLP00000033748	Secretory carrier-associated membrane protein.	FYVE and coiled-coil domain containing 1a.	0.464
LOC101165216	mblac2	ENSORLP00000002027	ENSORLP00000013183	Secretory carrier-associated membrane protein.	Metallo-beta-lactamase domain containing 2.	0.464
LOC101165216	sar1b	ENSORLP00000002027	ENSORLP00000027811	Secretory carrier-associated membrane protein.	Secretion associated, Ras related GTPase 1B; Belongs to the small GTPase superfamily. SAR1 family.	0.467
LOC101165216	scamp1	ENSORLP00000002027	ENSORLP00000002962	Secretory carrier-associated membrane protein.	Secretory carrier-associated membrane protein.	0.710
LOC101165216	scamp3	ENSORLP00000002027	ENSORLP00000000772	Secretory carrier-associated membrane protein.	Secretory carrier-associated membrane protein.	0.890
LOC101165216	slc25a14	ENSORLP00000002027	ENSORLP00000019381	Secretory carrier-associated membrane protein.	Solute carrier family 25 member 14; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.464
SCAMP1	LOC101165216	ENSORLP00000028153	ENSORLP00000002027	Secretory carrier-associated membrane protein.	Secretory carrier-associated membrane protein.	0.710
SCAMP1	fyco1	ENSORLP00000028153	ENSORLP00000033748	Secretory carrier-associated membrane protein.	FYVE and coiled-coil domain containing 1a.	0.643
SCAMP1	scamp3	ENSORLP00000028153	ENSORLP00000000772	Secretory carrier-associated membrane protein.	Secretory carrier-associated membrane protein.	0.720
SLC25A30	LOC101165216	ENSORLP00000013827	ENSORLP00000002027	Solute carrier family 25 member 30; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Secretory carrier-associated membrane protein.	0.464
fyco1	LOC101165216	ENSORLP00000033748	ENSORLP00000002027	FYVE and coiled-coil domain containing 1a.	Secretory carrier-associated membrane protein.	0.464
fyco1	SCAMP1	ENSORLP00000033748	ENSORLP00000028153	FYVE and coiled-coil domain containing 1a.	Secretory carrier-associated membrane protein.	0.643
fyco1	scamp1	ENSORLP00000033748	ENSORLP00000002962	FYVE and coiled-coil domain containing 1a.	Secretory carrier-associated membrane protein.	0.643
mblac2	LOC101165216	ENSORLP00000013183	ENSORLP00000002027	Metallo-beta-lactamase domain containing 2.	Secretory carrier-associated membrane protein.	0.464