STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166725Zic family member 6. (521 aa)    
Predicted Functional Partners:
mier1
Mesoderm induction early response 1b, transcriptional regulator.
      
 0.466
nr2f1
Nuclear receptor subfamily 2, group F, member 1a.
    
 0.442
cxxc4
CXXC finger 4.
      
 0.432
hsf4
Heat shock transcription factor 4.
   
 
 0.427
LOC101167482
Thyroid hormone receptor associated protein 3a.
   
 0.426
LOC101169674
SKI family transcriptional corepressor 1.
      
 0.410
lbh
LBH regulator of WNT signaling pathway.
      
 0.408
zfand5
Zinc finger, AN1-type domain 5a.
      
 0.408
LOC100301625
Forkhead box Q2.
   
 0.406
LOC101160104
Pre-B-cell leukemia homeobox 1b.
    
 0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.