STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITPNM2Phosphatidylinositol transfer protein membrane associated 2. (1302 aa)    
Predicted Functional Partners:
LOC101159054
BC1 (ubiquinol-cytochrome c reductase) synthesis-like; Belongs to the AAA ATPase family.
   
 
 0.686
LOC101167985
Si:ch211-1i11.3.
    
   0.605
map3k5
Mitogen-activated protein kinase kinase kinase 5.
    
   0.605
zfpl1
Zinc finger protein-like 1.
    
 
 0.564
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 
 0.527
LOC101174096
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 
 0.527
qser1
Glutamine and serine rich 1.
      
 0.514
ak4
GTP:AMP phosphotransferase AK3, mitochondrial; Involved in maintaining the homeostasis of cellular nucleotides by catalyzing the interconversion of nucleoside phosphates. Has GTP:AMP phosphotransferase and ITP:AMP phosphotransferase activities.
      
 0.466
ptprg
Carbonic anhydrase XVI b.
      
 0.465
LOC101164253
Uncharacterized protein.
      
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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