Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrp12Low density lipoprotein receptor-related protein 12. (867 aa)    
Predicted Functional Partners:
afap1
Actin filament associated protein 1.
      
 0.535
H2M6E4_ORYLA
Uncharacterized protein.
    
 0.498
LOC101165932
Intersectin 2a.
    
 0.498
ENSORLP00000034742
Uncharacterized protein.
    
 0.498
ENSORLP00000036645
EH domain-containing protein.
    
 0.498
ENSORLP00000041578
SH3 domain-containing protein.
    
 0.498
srbd1
S1 RNA binding domain 1.
   
  
 0.495
H2MJ33_ORYLA
Potassium channel, subfamily V, member 2b; Belongs to the potassium channel family.
      
 0.485
susd1
Sushi domain containing 1.
    
 0.475
fkrp
Fukutin related protein.
     
 0.465
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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