Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101154755VWFA domain-containing protein; Belongs to the integrin alpha chain family. (1068 aa)    
Predicted Functional Partners:
LOC105355609
F11 receptor, tandem duplicate 1.
     
 0.915
cd226
CD226 molecule.
    
 0.912
ENSORLP00000044930
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
  
  
 
0.901
LOC101154978
Integrin beta; Belongs to the integrin beta chain family.
   
 0.854
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.854
LOC101168465
Integrin beta; Belongs to the integrin beta chain family.
   
 0.773
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.773
itgb3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.773
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.773
itgb4
Integrin beta.
   
 0.767
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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