Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101158517Complement component 1, q subcomponent-like 4b. (239 aa)    
Predicted Functional Partners:
LOC101169564
Protein tyrosine phosphatase receptor type Sa.
      
 0.653
LOC101174175
Protein tyrosine phosphatase receptor type Sa.
      
 0.653
negr1
Neuronal growth regulator 1.
     
 0.517
LOC101170331
G_PROTEIN_RECEP_F1_2 domain-containing protein.
     
 0.510
LOC101159006
G protein-coupled receptor 37 like 1a.
     
 0.510
H2MI39_ORYLA
Neurotrophic tyrosine kinase, receptor, type 2b; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.508
ENSORLP00000027787
Neurotrophic tyrosine kinase, receptor, type 2b.
    
 0.508
mpp5
Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family.
    
 
 0.505
MPP5
Membrane palmitoylated protein 5; Belongs to the MAGUK family.
    
 
 0.505
ipo11
Importin 11.
      
 0.497
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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