Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nhej1Nonhomologous end-joining factor 1. (312 aa)    
Predicted Functional Partners:
lig4
DNA ligase.
    
 0.999
LOC101166932
X-ray repair complementing defective repair in Chinese hamster cells 4.
    
 0.999
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
 0.993
prkdc
Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family.
    
 0.985
ENSORLP00000027136
Uncharacterized protein.
    
 0.971
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
    
 0.970
LOC101159022
Uncharacterized protein.
    
 0.959
dclre1c
DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae).
     
 0.948
polm
DNA-directed DNA/RNA polymerase mu; Gap-filling polymerase involved in repair of DNA double- strand breaks by non-homologous end joining (NHEJ). Belongs to the DNA polymerase type-X family.
     
 0.824
poll
Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family.
     
 0.802
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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