STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170159Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (413 aa)    
Predicted Functional Partners:
ptch1
Patched 1.
   
 0.988
ptch2
Patched 2.
   
 0.985
hhip
Hedgehog interacting protein.
    
 0.982
boc
BOC cell adhesion associated, oncogene regulated.
    
 0.928
cdon
Cell adhesion associated, oncogene regulated.
    
 0.928
disp1
Dispatched homolog 1 (Drosophila).
   
 0.898
H2LCR5_ORYLA
Growth arrest-specific 1b.
    
 0.828
disp2
Dispatched homolog 2 (Drosophila).
   
 0.816
LOC101160152
Uncharacterized protein.
    
 0.803
gas1
Growth arrest-specific 1a.
    
 0.803
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.