STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP24Ubiquitin specific peptidase 24; Belongs to the peptidase C19 family. (2596 aa)    
Predicted Functional Partners:
ddb2
Damage-specific DNA binding protein 2.
    
 0.851
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.804
wdr76
WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family.
    
 0.716
zfand4
Zinc finger, AN1-type domain 4.
    
  0.677
usp10
Ubiquitin carboxyl-terminal hydrolase.
     
 0.672
egf
Epidermal growth factor.
      
 0.656
H2M6E4_ORYLA
Uncharacterized protein.
   
 
  0.650
LOC101165932
Intersectin 2a.
   
 
  0.650
ENSORLP00000034742
Uncharacterized protein.
   
 
  0.650
ENSORLP00000036645
EH domain-containing protein.
   
 
  0.650
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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