STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf609Zinc finger protein 609b. (1374 aa)    
Predicted Functional Partners:
H2LBV2_ORYLA
RRM domain-containing protein.
      
 0.694
mavs
CARD_2 domain-containing protein.
      
 0.494
taf6
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
      
 0.484
H2M3F5_ORYLA
BTB domain-containing protein.
   
  
 0.480
nanog
Homeobox domain-containing protein.
    
   0.466
map2k5
Mitogen-activated protein kinase kinase 5; Belongs to the protein kinase superfamily.
      
 0.464
LOC101174437
Muscleblind-like splicing regulator 3.
      
 0.464
tubgcp4
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.464
pyurf
PIGY upstream reading frame.
      
 0.464
srfbp1
BUD22 domain-containing protein.
      
 0.463
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.