STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2L8D8_ORYLAPH domain-containing protein. (1201 aa)    
Predicted Functional Partners:
ENSORLP00000037156
Calponin-homology (CH) domain-containing protein.
 
      0.899
H2MBY2_ORYLA
Uncharacterized protein.
 
 
0.856
Sptan1
Uncharacterized protein.
 
 
 0.835
ENSORLP00000035247
Uncharacterized protein.
   
0.754
ENSORLP00000035524
Uncharacterized protein.
 
 
0.754
ENSORLP00000028337
Uncharacterized protein.
 
 
 0.624
LOC101155449
Uncharacterized protein.
 
  
  0.615
actn3
Actinin alpha 3b.
 
  
  0.605
LOC101164086
Actinin, alpha 2b.
 
  
  0.595
ENSORLP00000027935
Uncharacterized protein.
 
 
 0.595
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.