Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dnpepAspartyl aminopeptidase; Belongs to the peptidase M18 family. (469 aa)    
Predicted Functional Partners:
man2c1
Mannosidase, alpha, class 2C, member 1.
   
 
 0.768
nme7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
   
  
 0.756
tnrc18
Trinucleotide repeat containing 18.
    
 
 0.733
atg9a
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
    
 
 0.723
LOC101175197
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
    
 
 0.723
gtf2h1
General transcription factor IIH, polypeptide 1.
    
   0.712
sidt2
SID1 transmembrane family, member 2.
      
 0.696
mpp1
Membrane protein, palmitoylated 1; Belongs to the MAGUK family.
    
   0.670
ncaph2
Non-SMC condensin II complex, subunit H2.
      
 0.649
LOC101168456
GABA(A) receptor-associated protein like 2.
   
 
 0.636
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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