STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnpepAspartyl aminopeptidase; Belongs to the peptidase M18 family. (469 aa)    
Predicted Functional Partners:
man2c1
Mannosidase, alpha, class 2C, member 1.
   
 
 0.697
tnrc18
Trinucleotide repeat containing 18.
    
 
 0.658
xpnpep3
X-prolyl aminopeptidase 3, mitochondrial.
   
 
 0.614
atg9a
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
    
 
 0.596
LOC101175197
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
    
 
 0.596
nme7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
   
  
 0.570
tp53i13
Uncharacterized protein.
   
  
 0.565
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit b.
   
  
 0.560
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
      
 0.560
ncaph2
Non-SMC condensin II complex, subunit H2.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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