STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170654Uncharacterized protein. (888 aa)    
Predicted Functional Partners:
sh3yl1
SH3 and SYLF domain containing 1.
      
 0.785
LOC101157800
Proteolipid protein 1b.
   
   0.602
LOC101171500
Proteolipid protein 1a.
   
   0.602
pcsk2
Proprotein convertase subtilisin/kexin type 2; Belongs to the peptidase S8 family.
   
  
 0.574
LOC101168588
Leucine rich repeat containing 4.1.
    
 0.489
LOC101156969
Uncharacterized protein.
      
 0.470
tmem53
Transmembrane protein 53.
      
 0.470
scg3
Secretogranin III.
   
  
 0.459
LOC101159914
Si:ch211-13k12.2.
      
 0.441
LOC101155504
Uncharacterized protein.
      
 0.441
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.