Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H2L8F7_ORYLAUncharacterized protein. (664 aa)    
Predicted Functional Partners:
ENSORLP00000031243
Uncharacterized protein.
 
    
 0.902
ENSORLP00000036062
Uncharacterized protein.
 
    
 0.899
Zcchc6
Uncharacterized protein.
 
      0.898
dis3l2
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.
   
 
 0.670
papolg
Poly(A) polymerase gamma.
   
 
 0.660
LOC101169811
CCHC-type domain-containing protein.
    
 0.647
sympk
Symplekin.
   
 0.520
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.512
cpsf3
Cleavage and polyadenylation specific factor 3.
    
 0.499
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 0.463
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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