STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDRGK1DDRGK domain containing 1. (290 aa)    
Predicted Functional Partners:
ufl1
UFM1-specific ligase 1.
    
 
 0.989
Ufc1
Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.
    
 
 0.988
cdk5rap3
CDK5 regulatory subunit associated protein 3.
   
 
 0.984
ufm1
Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.
    
 
 0.972
srpra
SRP receptor subunit alpha.
    
 
 0.924
srprb
SRP receptor subunit beta.
   
 
 0.866
znf366
Zinc finger protein 366.
      
 0.758
thnsl2
Threonine synthase-like 2.
      
 0.748
LOC101165235
ATPase H+ transporting accessory protein 1b.
     
 0.741
atp6ap1
ATPase H+ transporting accessory protein 1a.
     
 0.741
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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