STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2L8H4_ORYLASorting nexin 22. (108 aa)    
Predicted Functional Partners:
snx24
Sorting nexin 24.
    
  
0.567
LOC101171955
Uncharacterized protein.
      
 0.559
H2LYT8_ORYLA
Uncharacterized protein.
      
 0.558
LOC101157611
Cytochrome b561 family, member D1.
      
 0.558
nudt17
Nudix (nucleoside diphosphate linked moiety X)-type motif 17.
      
 0.520
gapvd1
GTPase activating protein and VPS9 domains 1.
    
 
 0.448
Wdfy4
WD_REPEATS_REGION domain-containing protein.
      
 0.441
LOC101155118
Uncharacterized protein.
    
 
 0.409
fnbp1
Formin binding protein 1b.
    
 
 0.409
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.