Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2L8H4_ORYLASorting nexin 22. (108 aa)    
Predicted Functional Partners:
snx24
Sorting nexin 24.
    
   0.939
LOC101157611
Cytochrome b561 family, member D1.
      
 0.743
LOC101171955
Uncharacterized protein.
      
 0.694
gapvd1
GTPase activating protein and VPS9 domains 1.
    
 
 0.692
nudt17
Nudix (nucleoside diphosphate linked moiety X)-type motif 17.
      
 0.692
gulp1
GULP PTB domain containing engulfment adaptor 1a.
      
 0.605
bccip
Protein BCCIP homolog; Belongs to the BCP1 family.
      
 0.539
H2LYT8_ORYLA
Uncharacterized protein.
      
 0.522
LOC101173561
MARCKS-like 1b.
    
 
 0.518
LOC101155118
Uncharacterized protein.
    
 
 0.508
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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