STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmtops3aTeleost multiple tissue opsin 3a; Belongs to the G-protein coupled receptor 1 family. (376 aa)    
Predicted Functional Partners:
LOC100049426
Zgc:66475.
    
 
 0.552
arnt
Aryl hydrocarbon receptor nuclear translocator.
      
 0.503
LOC101171662
PNPLA domain-containing protein.
      
 0.500
dok6
Docking protein 6.
      
 0.490
pxdc1
PX domain containing 1b.
      
 0.490
LOC101174986
Cryptochrome circadian regulator 5.
    
 
 0.486
LOC101168329
Cryptochrome DASH.
    
 
 0.470
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
      
 0.457
LOC101174183
Aryl hydrocarbon receptor nuclear translocator-like 2.
      
 0.457
LOC101173389
Cryptochrome circadian regulator 2.
    
 
 0.442
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.