Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
espl1Extra spindle pole bodies like 1, separase. (2165 aa)    
Predicted Functional Partners:
pttg1
Uncharacterized protein.
   
 0.999
rad21
Uncharacterized protein.
   
 0.996
smc3
Structural maintenance of chromosomes protein.
   
 0.995
LOC101173147
RAD21 cohesin complex component like 1.
   
 0.993
rec8
REC8 meiotic recombination protein b.
   
 0.991
smc1a
Structural maintenance of chromosomes protein.
   
 0.990
bub1
BUB1 mitotic checkpoint serine/threonine kinase.
   
 
 0.983
kif11
Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
  
 
 0.973
cdca8
Cell division cycle associated 8.
   
 
 0.972
LOC100301585
Stromal antigen 2b.
   
 0.966
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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